MatrixMasterEquation.h

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// Copyright (c) 2005 - 2011 Marc de Kamps
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
//
//    * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
//    * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation 
//      and/or other materials provided with the distribution.
//    * Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software 
//      without specific prior written permission.
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//      If you use this software in work leading to a scientific publication, you should include a reference there to
//      the 'currently valid reference', which can be found at http://miind.sourceforge.net
#ifndef _CODE_LIBS_GEOMLIB_MATRIXMASTEREQUATION_INCLUDE_GUARD
#define _CODE_LIBS_GEOMLIB_MATRIXMASTEREQUATION_INCLUDE_GUARD

#include "../NumtoolsLib/NumtoolsLib.h"
#include "MasterParameter.hpp"

using MPILib::Density;
using NumtoolsLib::ExStateDVIntegrator;
using NumtoolsLib::Precision;

namespace GeomLib {

  int DerivMatrixVersion( double t, const double y[], double dydt[], void* params);

  struct MatrixMasterEquation {


    MatrixMasterEquation
    (
      SpikingOdeSystem&,        
      Number,           
      Index,            
      const Precision&,       
      Time,           
      Time            

    );

    void Initialize
    (
      Index,          
      const vector<InputParameterSet>&  
    );

    const SpikingOdeSystem&         _system;
    const vector<Potential>&        _vec_potential;
    vector<Density>&            _vec_density;
    Index                 _i_reset;
    vector<Density>             _vec_matrix_state;

    NumtoolsLib::ExStateDVIntegrator<MasterParameter>   _matrix_integrator;
    NumtoolsLib::QaDirty<double>      _mat_transit;
  };
}

#endif // include guard