#include <libs/GeomLib/OUAlgorithm.hpp>

Inheritance diagram for GeomLib::OUAlgorithm:

Collaboration diagram for GeomLib::OUAlgorithm:

Public Types
typedef MPILib::DelayedConnection	WeightType

Public Member Functions
	OUAlgorithm (const NeuronParameter &)

	OUAlgorithm (const OUAlgorithm &)

virtual	~OUAlgorithm ()

virtual OUAlgorithm *	clone () const

virtual void	configure (const MPILib::SimulationRunParameter &)

virtual void	evolveNodeState (const std::vector< MPILib::Rate > &nodeVector, const std::vector< MPILib::DelayedConnection > &weightVector, MPILib::Time time)

virtual void	evolveNodeState (const std::vector< Rate > &nodeVector, const std::vector< MPILib::DelayedConnection > &weightVector, Time time, const std::vector< NodeType > &typeVector)

std::valarray< double > &	getArrayInterpretation (AlgorithmGrid &grid) const

std::valarray< double > &	getArrayState (AlgorithmGrid &grid) const

virtual MPILib::Rate	getCurrentRate () const

virtual MPILib::Time	getCurrentTime () const

virtual MPILib::AlgorithmGrid	getGrid (MPILib::NodeId, bool b_state=true) const

Number &	getStateSize (AlgorithmGrid &grid) const

Number	getStateSize (const AlgorithmGrid &grid) const

virtual void	prepareEvolve (const std::vector< MPILib::Rate > &nodeVector, const std::vector< MPILib::DelayedConnection > &weightVector, const std::vector< MPILib::NodeType > &typeVector)

Private Member Functions
MPILib::AlgorithmGrid	InitialGrid () const

ResponseParameter	InitializeParameters (const NeuronParameter &) const

vector< double >	InitialState () const

Private Attributes
NumtoolsLib::DVIntegrator< ResponseParameter >	_integrator

NeuronParameter	_parameter_neuron

ResponseParameter	_parameter_response

MuSigmaScalarProduct< MPILib::DelayedConnection >	_scalar_product

Detailed Description

<

Rate-based model with gain function based on a diffusion process.

Definition at line 40 of file OUAlgorithm.hpp.

Member Typedef Documentation

typedef MPILib::DelayedConnection MPILib::AlgorithmInterface< MPILib::DelayedConnection >::WeightType

inherited

Definition at line 41 of file AlgorithmInterface.hpp.

Constructor & Destructor Documentation

OUAlgorithm::OUAlgorithm ( const NeuronParameter & parameter )

Create an OUAlgorithm from neuronal parameters.

Definition at line 47 of file OUAlgorithm.cpp.

OUAlgorithm::OUAlgorithm ( const OUAlgorithm & algorithm )

copy ctor

Definition at line 67 of file OUAlgorithm.cpp.

OUAlgorithm::~OUAlgorithm ( )

virtual

virtual destructor

Definition at line 76 of file OUAlgorithm.cpp.

Member Function Documentation

OUAlgorithm * OUAlgorithm::clone ( ) const

virtual

Cloning operation, to provide each DynamicNode with its own Algorithm instance. Clients use the naked pointer at their own risk.

Implements MPILib::AlgorithmInterface< MPILib::DelayedConnection >.

Definition at line 160 of file OUAlgorithm.cpp.

void OUAlgorithm::configure ( const MPILib::SimulationRunParameter & parameter_simulation )

virtual

configure algorithm

Parameters

parameter_simulation simulation run parameter

Implements MPILib::AlgorithmInterface< MPILib::DelayedConnection >.

Definition at line 104 of file OUAlgorithm.cpp.

References MPILib::SimulationRunParameter::getMaximumNumberIterations(), MPILib::SimulationRunParameter::getTBegin(), MPILib::SimulationRunParameter::getTEnd(), and MPILib::SimulationRunParameter::getTStep().

void OUAlgorithm::evolveNodeState	(	const std::vector< MPILib::Rate > &	nodeVector,
		const std::vector< MPILib::DelayedConnection > &	weightVector,
		MPILib::Time	time
	)

virtual

Evolve the node state

Parameters

nodeVector	Vector of the node States
weightVector	Vector of the weights of the nodes
time	Time point of the algorithm

Reimplemented from MPILib::AlgorithmInterface< MPILib::DelayedConnection >.

Definition at line 123 of file OUAlgorithm.cpp.

virtual void MPILib::AlgorithmInterface< MPILib::DelayedConnection >::evolveNodeState	(	const std::vector< Rate > &	nodeVector,
		const std::vector< MPILib::DelayedConnection > &	weightVector,
		Time	time,
		const std::vector< NodeType > &	typeVector
	)

inlinevirtualinherited

Evolve the node state. In the default case it simply calls envolveNodeState without the NodeTypes. However if an algorithm needs the nodeTypes of the precursors overwrite this function.

Parameters

nodeVector	Vector of the node States
weightVector	Vector of the weights of the nodes
time	Time point of the algorithm
typeVector	Vector of the NodeTypes of the precursors

Definition at line 83 of file AlgorithmInterface.hpp.

std::valarray<double>& MPILib::AlgorithmInterface< MPILib::DelayedConnection >::getArrayInterpretation ( AlgorithmGrid & grid ) const

inlineinherited

Definition at line 125 of file AlgorithmInterface.hpp.

std::valarray<double>& MPILib::AlgorithmInterface< MPILib::DelayedConnection >::getArrayState ( AlgorithmGrid & grid ) const

inlineinherited

Definition at line 120 of file AlgorithmInterface.hpp.

Rate OUAlgorithm::getCurrentRate ( ) const

virtual

Current output rate of the population.

Implements MPILib::AlgorithmInterface< MPILib::DelayedConnection >.

Definition at line 176 of file OUAlgorithm.cpp.

Time OUAlgorithm::getCurrentTime ( ) const

virtual

Current tme of the simulation.

Implements MPILib::AlgorithmInterface< MPILib::DelayedConnection >.

Definition at line 171 of file OUAlgorithm.cpp.

AlgorithmGrid OUAlgorithm::getGrid	(	MPILib::NodeId	,
		bool	b_state = `true`
	)		const

virtual

Current AlgorithmGrid.

Implements MPILib::AlgorithmInterface< MPILib::DelayedConnection >.

Definition at line 166 of file OUAlgorithm.cpp.

Number& MPILib::AlgorithmInterface< MPILib::DelayedConnection >::getStateSize ( AlgorithmGrid & grid ) const

inlineinherited

Definition at line 130 of file AlgorithmInterface.hpp.

Number MPILib::AlgorithmInterface< MPILib::DelayedConnection >::getStateSize ( const AlgorithmGrid & grid ) const

inlineinherited

Definition at line 135 of file AlgorithmInterface.hpp.

MPILib::AlgorithmGrid GeomLib::OUAlgorithm::InitialGrid ( ) const

private

ResponseParameter OUAlgorithm::InitializeParameters ( const NeuronParameter & parameter ) const

private

Definition at line 88 of file OUAlgorithm.cpp.

References GeomLib::NeuronParameter::_tau, GeomLib::NeuronParameter::_tau_refractive, GeomLib::NeuronParameter::_theta, GeomLib::NeuronParameter::_V_reset, GeomLib::ResponseParameter::tau, GeomLib::ResponseParameter::tau_refractive, GeomLib::ResponseParameter::theta, and GeomLib::ResponseParameter::V_reset.

vector< double > OUAlgorithm::InitialState ( ) const

private

Definition at line 80 of file OUAlgorithm.cpp.

References OU_STATE_DIMENSION.

void OUAlgorithm::prepareEvolve	(	const std::vector< MPILib::Rate > &	nodeVector,
		const std::vector< MPILib::DelayedConnection > &	weightVector,
		const std::vector< MPILib::NodeType > &	typeVector
	)

virtual

prepare the Evolve method

Parameters

nodeVector	Vector of the node States
weightVector	Vector of the weights of the nodes
typeVector	Vector of the NodeTypes of the precursors

Reimplemented from MPILib::AlgorithmInterface< MPILib::DelayedConnection >.

Definition at line 146 of file OUAlgorithm.cpp.

References GeomLib::MuSigma::_mu.

Member Data Documentation

NumtoolsLib::DVIntegrator<ResponseParameter> GeomLib::OUAlgorithm::_integrator

private

Definition at line 119 of file OUAlgorithm.hpp.

NeuronParameter GeomLib::OUAlgorithm::_parameter_neuron

private

Definition at line 117 of file OUAlgorithm.hpp.

ResponseParameter GeomLib::OUAlgorithm::_parameter_response

private

Definition at line 118 of file OUAlgorithm.hpp.

MuSigmaScalarProduct<MPILib::DelayedConnection> GeomLib::OUAlgorithm::_scalar_product

private

Definition at line 120 of file OUAlgorithm.hpp.

The documentation for this class was generated from the following files:

/Users/scsmdk/miind-git/libs/GeomLib/OUAlgorithm.hpp
/Users/scsmdk/miind-git/libs/GeomLib/OUAlgorithm.cpp

Public Types

Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation