#include <libs/MPILib/include/PersistantAlgorithm.hpp>

Inheritance diagram for MPILib::algorithm::PersistantAlgorithm:

Collaboration diagram for MPILib::algorithm::PersistantAlgorithm:

Public Types
typedef double	WeightType

Public Member Functions
	PersistantAlgorithm ()

	PersistantAlgorithm (const PersistantAlgorithm &)

	~PersistantAlgorithm ()

virtual PersistantAlgorithm *	clone () const

virtual void	configure (const SimulationRunParameter &simParam)

virtual void	evolveNodeState (const std::vector< Rate > &nodeVector, const std::vector< double > &weightVector, Time time)

virtual void	evolveNodeState (const std::vector< Rate > &nodeVector, const std::vector< double > &weightVector, Time time, const std::vector< NodeType > &typeVector)

std::valarray< double > &	getArrayInterpretation (AlgorithmGrid &grid) const

std::valarray< double > &	getArrayState (AlgorithmGrid &grid) const

virtual Rate	getCurrentRate () const

virtual Time	getCurrentTime () const

virtual AlgorithmGrid	getGrid (NodeId, bool) const

Number &	getStateSize (AlgorithmGrid &grid) const

Number	getStateSize (const AlgorithmGrid &grid) const

virtual void	prepareEvolve (const std::vector< Rate > &nodeVector, const std::vector< double > &weightVector, const std::vector< NodeType > &typeVector)

Private Member Functions
std::vector< double >	getInitialState () const

double	innerProduct (const std::vector< Rate > &nodeVector, const std::vector< double > &weightVector)

Private Attributes
MPILib::Rate	_rate

MPILib::Time	_time

Detailed Description

Definition at line 29 of file PersistantAlgorithm.hpp.

Member Typedef Documentation

typedef double MPILib::AlgorithmInterface< double >::WeightType

inherited

Definition at line 41 of file AlgorithmInterface.hpp.

Constructor & Destructor Documentation

MPILib::algorithm::PersistantAlgorithm::PersistantAlgorithm ( )

Definition at line 36 of file PersistantAlgorithm.cpp.

Referenced by clone().

MPILib::algorithm::PersistantAlgorithm::PersistantAlgorithm ( const PersistantAlgorithm & rhs )

Cloning operation, to provide each DynamicNode with its own Algorithm instance. Clients use the naked pointer at their own risk.

Definition at line 42 of file PersistantAlgorithm.cpp.

MPILib::algorithm::PersistantAlgorithm::~PersistantAlgorithm ( )

Definition at line 48 of file PersistantAlgorithm.cpp.

Member Function Documentation

PersistantAlgorithm * MPILib::algorithm::PersistantAlgorithm::clone ( ) const

virtual

Cloning operation, to provide each DynamicNode with its own Algorithm instance. Clients use the naked pointer at their own risk.

Implements MPILib::AlgorithmInterface< double >.

Definition at line 51 of file PersistantAlgorithm.cpp.

References PersistantAlgorithm().

void MPILib::algorithm::PersistantAlgorithm::configure ( const SimulationRunParameter & simParam )

virtual

Configure the Algorithm

Parameters

simParam

Implements MPILib::AlgorithmInterface< double >.

Definition at line 55 of file PersistantAlgorithm.cpp.

References _time, and MPILib::SimulationRunParameter::getTBegin().

void MPILib::algorithm::PersistantAlgorithm::evolveNodeState	(	const std::vector< Rate > &	nodeVector,
		const std::vector< double > &	weightVector,
		Time	time
	)

virtual

Evolve the node state

Parameters

nodeVector	Vector of the node States
weightVector	Vector of the weights of the nodes
time	Time point of the algorithm

Reimplemented from MPILib::AlgorithmInterface< double >.

Definition at line 60 of file PersistantAlgorithm.cpp.

References _rate, _time, and innerProduct().

virtual void MPILib::AlgorithmInterface< double >::evolveNodeState	(	const std::vector< Rate > &	nodeVector,
		const std::vector< double > &	weightVector,
		Time	time,
		const std::vector< NodeType > &	typeVector
	)

inlinevirtualinherited

Evolve the node state. In the default case it simply calls envolveNodeState without the NodeTypes. However if an algorithm needs the nodeTypes of the precursors overwrite this function.

Parameters

nodeVector	Vector of the node States
weightVector	Vector of the weights of the nodes
time	Time point of the algorithm
typeVector	Vector of the NodeTypes of the precursors

Definition at line 83 of file AlgorithmInterface.hpp.

std::valarray<double>& MPILib::AlgorithmInterface< double >::getArrayInterpretation ( AlgorithmGrid & grid ) const

inlineinherited

Definition at line 125 of file AlgorithmInterface.hpp.

std::valarray<double>& MPILib::AlgorithmInterface< double >::getArrayState ( AlgorithmGrid & grid ) const

inlineinherited

Definition at line 120 of file AlgorithmInterface.hpp.

Rate MPILib::algorithm::PersistantAlgorithm::getCurrentRate ( ) const

virtual

The calculated rate of the node

Returns: The rate of the node

Implements MPILib::AlgorithmInterface< double >.

Definition at line 79 of file PersistantAlgorithm.cpp.

References _rate.

Time MPILib::algorithm::PersistantAlgorithm::getCurrentTime ( ) const

virtual

The current timepoint

Returns: The current time point

Implements MPILib::AlgorithmInterface< double >.

Definition at line 75 of file PersistantAlgorithm.cpp.

References _time.

AlgorithmGrid MPILib::algorithm::PersistantAlgorithm::getGrid	(	NodeId	,
		bool	b_state
	)		const

virtual

Stores the algorithm state in a Algorithm Grid

Parameters

NodeId,id	of the node that needs to return the grid
b_state,return	the entire state if true, a reduced grid with just the firing rate info if false

Returns: The state of the algorithm. The Grid must at least contain one element; an empty grid will cause a crash.

Implements MPILib::AlgorithmInterface< double >.

Definition at line 102 of file PersistantAlgorithm.cpp.

References MPILib::WILSON_COWAN_STATE_DIMENSION.

std::vector< double > MPILib::algorithm::PersistantAlgorithm::getInitialState ( ) const

private

Definition at line 96 of file PersistantAlgorithm.cpp.

References MPILib::WILSON_COWAN_STATE_DIMENSION.

Number& MPILib::AlgorithmInterface< double >::getStateSize ( AlgorithmGrid & grid ) const

inlineinherited

Definition at line 130 of file AlgorithmInterface.hpp.

Number MPILib::AlgorithmInterface< double >::getStateSize ( const AlgorithmGrid & grid ) const

inlineinherited

Definition at line 135 of file AlgorithmInterface.hpp.

double MPILib::algorithm::PersistantAlgorithm::innerProduct	(	const std::vector< Rate > &	nodeVector,
		const std::vector< double > &	weightVector
	)

private

Definition at line 83 of file PersistantAlgorithm.cpp.

Referenced by evolveNodeState().

virtual void MPILib::AlgorithmInterface< double >::prepareEvolve	(	const std::vector< Rate > &	nodeVector,
		const std::vector< double > &	weightVector,
		const std::vector< NodeType > &	typeVector
	)

inlinevirtualinherited

prepare the Evolve method

Parameters

nodeVector	Vector of the node States
weightVector	Vector of the weights of the nodes
typeVector	Vector of the NodeTypes of the precursors

Definition at line 95 of file AlgorithmInterface.hpp.

Member Data Documentation

MPILib::Rate MPILib::algorithm::PersistantAlgorithm::_rate

private

Definition at line 81 of file PersistantAlgorithm.hpp.

Referenced by evolveNodeState(), and getCurrentRate().

MPILib::Time MPILib::algorithm::PersistantAlgorithm::_time

private

Definition at line 82 of file PersistantAlgorithm.hpp.

Referenced by configure(), evolveNodeState(), and getCurrentTime().

The documentation for this class was generated from the following files:

/Users/scsmdk/miind-git/libs/MPILib/include/PersistantAlgorithm.hpp
/Users/scsmdk/miind-git/libs/MPILib/src/PersistantAlgorithm.cpp

Public Types

Public Member Functions

Private Member Functions

Private Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation